Package index • PKbioanalysis

Installations

add_DB(): Add double blank (DB) to a plate
add_blank(): Add blank to the plate Can be either double blank (DB), CS0IS+ or CS+IS0
add_cs_curve(): Add calibration curve to the plate
add_QC(): Add quality control samples to the plate
add_DQC(): Add dilution quality control (DQC) to the plate
add_samples(): Add samples to plate with pharmacokinetic attributes
add_samples_db(): Add samples from the sample log to the plate
add_samples_db2(): Add samples from the sample log to the plate with multiplication
add_suitability(): Add suitability sample to the plate

make_calibration_study(): Create a calibration study with calibration standards and QCs
make_metabolic_study(): Create a metabolic study layout

build_injec_seq(): Create Injection Sequence
combine_injec_lists(): Create Sample List with rigorous design
write_injec_seq(): Write injection sequence to database
download_sample_list(): Download sample list from database to local spreadsheet with vendor specific format

read_chrom(): Read Chromatogram Files
plot_chrom(): Plot Chromatogram per Sample for Selected transitions
filter_chrom(): title Filter Chromatogram Peaks
get_compound_ID(): Find Compound ID from compound Name
get_sample_ID(): Find Sample ID from sample Name
get_sample_names(): Find sample names for all samples
has_default_RT(): check if default expected RT is set for a compound
is_smoothed(): Return an indicator if the chromatogram is smoothed
is_integrated(): Check if peak was integrated for a specific compound
read_experiment_results(): Read experiment results
smooth_chrom(): Smooth Chromatogram Peaks
update_RT(): Manually Update Observed RT for either all compounds, all next samples, or single compound and sample
export_run(): Export run
export_integration(): Export Expected RT
extract_peak_bounds(): Extract Peak Boundaries
check_chrom_cmpds(): Check Matching of Compound and Transitions in chrom_res and method database
chrom_app(): chrom_apps
area_report.PeakRes(): gt table of areas
integrate(): integrate Peak with trapzoid method given start and end
plot_peak_areas.PeakRes(): Plot peak areas
plot_RT.ChromRes(): Plotting RT intervals of chromatogram
plot_RT.PeakRes(): Plot RT
run_summary(): Get Summary of an object

precision_per_vial(): Precision per vial
prefilter_precision_data(): Filter data
calc_var_summary(): Calculate Summary Statistics for Each Concentration Level For Either Concentration, Area, or Area Ratio
estim_lloq(): Estimate LLOQ From Existing Additive and Proportional errors
fit_var(): Estimate Additive and proportional errors from calibration data
formated_print(): Format and print the results of fit_var
cv(): Calculate Coefficient of variation
plot_var_pattern(): Plot Relationship Between Concentration and CV/SD
estim_dil_limit(): Estimate Dilution Limit Based on Additive and Proportional Errors and LLOQ