Package index • PKbioanalysis

Plate Design

Generate Plate

generate_96(): Generate 96 well plate

Add Entries to Plate

add_DB(): Add double blank (DB) to a plate

add_blank(): Add blank to the plate Can be either double blank (DB), CS0IS+ or CS+IS0

add_cs_curve(): Add calibration curve to the plate

add_QC(): Add quality control samples to the plate

add_DQC(): Add dilution quality control (DQC) to the plate

add_samples(): Add samples to plate with pharmacokinetic attributes

add_samples_c(): Cartesian product of sample factors to a plate

add_suitability(): Add suitability sample to the plate

Plate Filling Orientation

fill_scheme(): Filling orientation of the plate

Multiple Plates

combine_plates(): Combine plates in MultiPlate object

length(<MultiPlate>): Length method for MultiPlate

`[[`(<MultiPlate>): Subsetting method for MultiPlate

Study Starters

make_calibration_study(): Create a calibration study with calibration standards and QCs

make_metabolic_study(): Create a metabolic study layout

Plate and Study Inspection

plot(<PlateObj>): Plotting 96 well plate

plot_design(): Plot the design of the plate

plate_metadata(): Set plate description

Plate Registration

register_plate(): Register a plate This will save the plate to the database

Injection Sequences

build_injec_seq(): Create Injection Sequence

combine_injec_lists(): Create Sample List with rigorous design

write_injec_seq(): Write injection sequence to database

download_sample_list(): Download sample list from database to local spreadsheet with vendor specific format

UI for Injection Sequence and Dilution Scheme

plate_app(): bioanalytic_app

Chromatogram Analysis

read_chrom(): Read Chromatogram Files

plot_chrom(): Plot Chromatogram per Sample for Selected transitions

filter_chrom(): title Filter Chromatogram Peaks

get_compound_ID(): Find Compound ID from compound Name

get_sample_ID(): Find Sample ID from sample Name

get_sample_names(): Find sample names for all samples

has_default_RT(): check if default expected RT is set for a compound

is_smoothed(): Return an indicator if the chromatogram is smoothed

is_integrated(): Check if peak has been integrated

read_experiment_results(): Read experiment results

smooth_chrom(): Smooth Chromatogram Peaks

precision(): Calculate precision (Coefficient of variation)