This function plots chromatograms for selected transitions per sample.
Usage
plot_chrom(
chrom_res,
ncol = 2,
transitions_ids = NULL,
sample_id,
integrated = FALSE,
show_RT = FALSE,
smoothed = FALSE
)Arguments
- chrom_res
ChromRes object
- ncol
Number of columns for facet_wrap. If 0, the chromatograms are overlayed in a single plot.
- transitions_ids
Vector of transition IDs to plot. If NULL, all transitions are plotted.
- sample_id
Sample ID to plot.
- integrated
Boolean to show integrated area overlayed
- show_RT
Boolean to show RT values
- smoothed
Boolean to show smoothed chromatogram
Examples
path <- system.file("extdata", "waters_raw_ex", package="PKbioanalysis")
main <- read_chrom(path)
#> Error in checkmate::assertNumber(method, lower = 1, null.ok = FALSE): argument "method" is missing, with no default
plot_chrom(main, ncol = 2, transitions_ids = c(18,19,20), sample_id = 3)
#> Error: object 'main' not found
plot_chrom(main, ncol = 3, transitions_ids = c(18,19,20), sample_id = 3)
#> Error: object 'main' not found
plot_chrom(main, ncol = 1, transitions_ids = c(18,19,20), sample_id = 3)
#> Error: object 'main' not found
plot_chrom(main, ncol = NULL, transitions_ids = c(18,19,20), sample_id = 3)
#> Error: object 'main' not found