This function plots chromatograms for selected transitions per sample.
Usage
plot_chrom(
chrom_res,
ncol = 2,
transitions_ids = NULL,
sample_id,
integrated = FALSE,
show_RT = FALSE,
smoothed = FALSE
)Arguments
- chrom_res
ChromRes object
- ncol
Number of columns for facet_wrap. If 0, the chromatograms are overlayed in a single plot.
- transitions_ids
Vector of transition IDs to plot. If NULL, all transitions are plotted.
- sample_id
Sample ID to plot.
- integrated
Boolean to show integrated area overlayed
- show_RT
Boolean to show RT values
- smoothed
Boolean to show smoothed chromatogram
Examples
if (FALSE) { # \dontrun{
path <- system.file("extdata", "waters_raw_ex", package="PKbioanalysis")
main <- read_chrom(path, method = 1)
plot_chrom(main, ncol = 2, transitions_ids = c(18,19,20), sample_id = 3)
plot_chrom(main, ncol = 3, transitions_ids = c(18,19,20), sample_id = 3)
plot_chrom(main, ncol = 1, transitions_ids = c(18,19,20), sample_id = 3)
plot_chrom(main, ncol = NULL, transitions_ids = c(18,19,20), sample_id = 3)
} # }